supportsci:tools
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| supportsci:tools [2019/04/03 11:59] – [Pipe (jop83)] benito | supportsci:tools [2019/04/08 11:58] (current) – [EEE(2)] benito | ||
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| </ | </ | ||
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| + | **pipelet.py** - Parses the pipe letter (exp.pipelet) to be sent to the PI after pipelining the data. | ||
| + | < | ||
| + | usage: pipelet.py [-h] [-v] [-o OUTPUT] [-c CREDENTIALS] [-u USERNAME] [-p PASSWORD] | ||
| + | | ||
| + | |||
| + | Creates a .pipelet file in the current directory. This letter is the content that must | ||
| + | be sent to the PI after pipelining an experiment. It contains information about the | ||
| + | pipeline output and the credentials to access the data. | ||
| + | It takes the credentials from the username_password.auth file that should be placed in | ||
| + | the current directory (otherwise specify its file, or the username and password as parameters). | ||
| + | The user must provide the following information: | ||
| + | - The experiment name (case insensitive). | ||
| + | - Who are you (the Support Scientist). Type your surname. | ||
| + | |||
| + | positional arguments: | ||
| + | experiment | ||
| + | jss JIVE Support Scientist doing the post-processing (your surname). | ||
| + | |||
| + | optional arguments: | ||
| + | -h, --help | ||
| + | -v, --version | ||
| + | -o OUTPUT, --output OUTPUT | ||
| + | Output directory where the file {experiment}.pipelet will be store | ||
| + | (by default the current directory) | ||
| + | -c CREDENTIALS, | ||
| + | Auth file containing the username and password in its name (required | ||
| + | if *.auth is not in current directory). | ||
| + | -u USERNAME, --username USERNAME | ||
| + | Username to access the data (required if no credential file exists) | ||
| + | -p PASSWORD, --password PASSWORD | ||
| + | Password to access the data (required if no credential file exists) | ||
| + | |||
| + | </ | ||
| =====Pipe (jop83)===== | =====Pipe (jop83)===== | ||
| Line 307: | Line 341: | ||
| **uvflgall.csh** - makes a uvflgfs file from any .log files in the current directory. Also changes flagr line to make uvflg.pl happier. | **uvflgall.csh** - makes a uvflgfs file from any .log files in the current directory. Also changes flagr line to make uvflg.pl happier. | ||
| - | **comment_file.py** - tool to create the comment file to be located in the pipeline output before running the feedback.pl script (and after having run the pipeline): | + | **comment_tasav_file.py** - tool to create the comment file to be located in the pipeline output before running the feedback.pl script (and after having run the pipeline): |
| < | < | ||
| - | usage: | + | usage: |
| + | experiment | ||
| - | Creates a .comment file for the EVN Pipeline. Given a default | + | Creates a .comment file (in $OUT/exp directory) and a .tasav.txt file (in |
| - | customizes | + | $IN/exp). Given the default |
| - | will ask you in the terminal about all the required inputs. | + | data from the given experiment. The script |
| + | different locations (ccsbeta, pipe $IN and $OUT directories). The EVN Pipeline | ||
| + | must have been run before calling this script. | ||
| positional arguments: | positional arguments: | ||
| Line 322: | Line 359: | ||
| optional arguments: | optional arguments: | ||
| -h, --help | -h, --help | ||
| - | -o OUTPUT, --output OUTPUT | ||
| - | Output directory where the file {experiment}.comment | ||
| - | will be saved (by default in | ||
| - | / | ||
| -v, --version | -v, --version | ||
| + | -oc OUTPUT_COMMENT, | ||
| + | Output directory where the file {experiment}.comment | ||
| + | will be saved (by default in $OUT/ | ||
| + | -ot OUTPUT_TASAV, | ||
| + | Output directory where the file {experiment}.tasav.txt | ||
| + | will be saved (by default in $IN/ | ||
| + | |||
| </ | </ | ||
| All additional data are taken from different files: the script access ccsbeta to get the epoch of the observation (from the MASTER_PROJECT.LIS file), and it also reads the pipeline input file and the pipeline output .SCAN and .DTSUM files. The default output will be in $OUT/ | All additional data are taken from different files: the script access ccsbeta to get the epoch of the observation (from the MASTER_PROJECT.LIS file), and it also reads the pipeline input file and the pipeline output .SCAN and .DTSUM files. The default output will be in $OUT/ | ||
supportsci/tools.1554292756.txt.gz · Last modified: 2019/04/03 11:59 by benito