supportsci:tools
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supportsci:tools [2019/02/26 12:55] – benito | supportsci:tools [2019/04/08 11:58] (current) – [EEE(2)] benito | ||
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</ | </ | ||
+ | |||
+ | **pipelet.py** - Parses the pipe letter (exp.pipelet) to be sent to the PI after pipelining the data. | ||
+ | < | ||
+ | usage: pipelet.py [-h] [-v] [-o OUTPUT] [-c CREDENTIALS] [-u USERNAME] [-p PASSWORD] | ||
+ | | ||
+ | |||
+ | Creates a .pipelet file in the current directory. This letter is the content that must | ||
+ | be sent to the PI after pipelining an experiment. It contains information about the | ||
+ | pipeline output and the credentials to access the data. | ||
+ | It takes the credentials from the username_password.auth file that should be placed in | ||
+ | the current directory (otherwise specify its file, or the username and password as parameters). | ||
+ | The user must provide the following information: | ||
+ | - The experiment name (case insensitive). | ||
+ | - Who are you (the Support Scientist). Type your surname. | ||
+ | |||
+ | positional arguments: | ||
+ | experiment | ||
+ | jss JIVE Support Scientist doing the post-processing (your surname). | ||
+ | |||
+ | optional arguments: | ||
+ | -h, --help | ||
+ | -v, --version | ||
+ | -o OUTPUT, --output OUTPUT | ||
+ | Output directory where the file {experiment}.pipelet will be store | ||
+ | (by default the current directory) | ||
+ | -c CREDENTIALS, | ||
+ | Auth file containing the username and password in its name (required | ||
+ | if *.auth is not in current directory). | ||
+ | -u USERNAME, --username USERNAME | ||
+ | Username to access the data (required if no credential file exists) | ||
+ | -p PASSWORD, --password PASSWORD | ||
+ | Password to access the data (required if no credential file exists) | ||
+ | |||
+ | </ | ||
=====Pipe (jop83)===== | =====Pipe (jop83)===== | ||
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**uvflgall.csh** - makes a uvflgfs file from any .log files in the current directory. Also changes flagr line to make uvflg.pl happier. | **uvflgall.csh** - makes a uvflgfs file from any .log files in the current directory. Also changes flagr line to make uvflg.pl happier. | ||
+ | |||
+ | **comment_tasav_file.py** - tool to create the comment file to be located in the pipeline output before running the feedback.pl script (and after having run the pipeline): | ||
+ | |||
+ | < | ||
+ | usage: comment_tasav_file.py [-h] [-v] [-oc OUTPUT_COMMENT] [-ot OUTPUT_TASAV] | ||
+ | | ||
+ | |||
+ | Creates a .comment file (in $OUT/exp directory) and a .tasav.txt file (in | ||
+ | $IN/exp). Given the default templates, it customizes them to include the basic | ||
+ | data from the given experiment. The script takes the information from | ||
+ | different locations (ccsbeta, pipe $IN and $OUT directories). The EVN Pipeline | ||
+ | must have been run before calling this script. | ||
+ | |||
+ | positional arguments: | ||
+ | experiment | ||
+ | write {exp}_number (e.g. ev100_1 | ||
+ | |||
+ | optional arguments: | ||
+ | -h, --help | ||
+ | -v, --version | ||
+ | -oc OUTPUT_COMMENT, | ||
+ | Output directory where the file {experiment}.comment | ||
+ | will be saved (by default in $OUT/ | ||
+ | -ot OUTPUT_TASAV, | ||
+ | Output directory where the file {experiment}.tasav.txt | ||
+ | will be saved (by default in $IN/ | ||
+ | |||
+ | </ | ||
+ | All additional data are taken from different files: the script access ccsbeta to get the epoch of the observation (from the MASTER_PROJECT.LIS file), and it also reads the pipeline input file and the pipeline output .SCAN and .DTSUM files. The default output will be in $OUT/ | ||
+ | |||
+ | |||
+ |
supportsci/tools.1551185706.txt.gz · Last modified: 2019/02/26 12:55 by benito